Bishop Stuart University intends to have several campuses but at present it has only two campuses, Kakoba is the main campus and Ruharo is a second campus.

Main campus
Kakoba which is the main campus of the university is on 48.2 hectares of land, 5 km east of Mbarara  Municipalityalong Buremba road. The main campus has a beautiful site of hills (Mbarara) and River Rwizi meandering below it.

Ruharo campus
This campus is located at Ruharo hill in the neighbourhood of the Diocesan Cathedral of St. James. It has a very attractive location with medical services around. It is very conducive for different types of people especially students on evening degree and diploma programmes  from around Mbarara town and neighboring areas.

It is currently, home to Nursing Program